Two problems related to ignition have been reported for the 2006 Honda CR-V. The most recently reported issues are listed below. Please also check out the statistics and reliability analysis of the 2006 Honda CR-V based on all problems reported for the 2006 CR-V.
Vehicle began surging then lost power. Dash warning lights for vsa, engine, and "!" came on as vehicle lost power then stalled. Turned off ignition and then restarted. Ran fine after it cooled off for a few minutes. Still happening over a year later. Internet search reveals this is a common problem spread across many model years. Dealers unable to solve problem and have no idea what is causing it.
Electrical problem. From the first morning after I purchased vehicle until warmer weather came. In cold weather, below 34 degrees, even before key is placed in ignition, the speedometer is twitching showing electrical current going through. Once key is placed in ignition, for the first 3-8 minutes, the electrical system does not work. Trip meter is reset, inside dashboard panel has a mind of it's own. Dealer has so far replaced the fuse box and the electrical cluster. They don't know what to do so have called american Honda to take over.