One problem related to software has been reported for the 2013 Honda CR-V. The most recently reported issues are listed below. Please also check out the statistics and reliability analysis of the 2013 Honda CR-V based on all problems reported for the 2013 CR-V.
On my 4th battery, they keep dying leaving us stranded. Software was updated by dealer there is a internal Honda memo how to resolve but it did not work. No current drain they checked. Just today with a 15 month old battery it died and yet again the battery needed to be replaced. Only solution is to replace battery each year. Bad design my loyalty to Honda is fading fast.