Ford Contour owners have reported 7 problems related to manual transmission (under the power train category). The most recently reported issues are listed below. Also please check out the statistics and reliability analysis of Ford Contour based on all problems reported for the Contour.
Car has always stalled and I was told by a mechanic that it was because the car was made like a stick shift so it stalls at stop signs and lights sometimes. Now my car is stalling as I start going through lights and I was almost hit by a car from behind.
 
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all problems of the 1996 Ford Contour
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The convertor clutch was slipping in the transmission, transmission was replaced.
When attempting to shift into 3rd gear, gears grind severely.
 
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all problems of the 1998 Ford Contour
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Man-trans: vehicle parked on hill, unoccupied, emergency brake not applied; popped out of gear; rolled forward down a hill; ran into two parked vehicles. Tt.
Can't get car into first gear.
Consumer states that vehicle went into reverse without any notice.
 
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all problems of the 1999 Ford Contour
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I feel that there should be a recall on the standard transmissions by Ford because there is defenitely something defective with this transmission.